Skip to main content

Table 2 Description of 25 Proteomic Features, 100 Morphological, and 51 Architectural

From: Supervised Regularized Canonical Correlation Analysis: integrating histologic and proteomic measurements for predicting biochemical recurrence following prostate surgery

Proteomic

#

Description

Proteins Identified

25

Some include: CSNK2A1 protein, Dihydroxyacetone kinase,

  

Dynamin-2, Glycogenin-1, Mitochondrial PDHA1, Mu-crystallin

  

homolog, Nit protein 2, Nucleolin, Synaptonemal complex protein 1

  

Putative uncharacterized protein RPL3

Morphological

 

Description

Gland Morphology

100

Area Ratio, distance Ratio, Standard Deviation of Distance,

  

Variance of Distance, Distance Ratio, Perimeter, Ratio,

  

Smoothness, Invariant Moment 1-7, Fractal Dimension, Fourier

  

Descriptor 1-10 (Mean, Std. Dev, Median, Min/Max of each)

Architectural

 

Description

Voronoi Diagram

12

Polygon area, perimeter, chord length: mean, std. dev., min/max ratio, disorder

Delaunay Triangulation

8

Triangle side length, area: mean, std. dev., min/max ratio, disorder

Minimum Spanning Tree

4

Edge length: mean, std. dev., min/max ratio, disorder

Nearest Neighbors

27

Density of nuclei, distance to nearest nuclei