Table 1 Gene model accuracy for gene prediction/annotation programs
Reference Organism | Performance Category | Ab Initio Predictions | MAKER Annotations | ||||
|---|---|---|---|---|---|---|---|
| Â | Â | Augustus | GeneMark | SNAP | Augustus | GeneMark | SNAP |
A. thaliana | Nucleotide Accuracy | 77.04% | 74.68% | 69.78% | 80.53% | 79.39% | 80.27% |
| Â | Exon Accuracy | 67.03% | 61.31% | 56.40% | 67.81% | 69.60% | 68.78% |
D. melanogaster | Nucleotide Accuracy | 76.08% | 66.54% | 69.29% | 76.42% | 73.66% | 74.33% |
| Â | Exon Accuracy | 61.37% | 47.31% | 47.01% | 58.56% | 58.03% | 58.49% |
C. elegans | Nucleotide Accuracy | 88.29% | 88.09% | 85.10% | 87.14% | 86.29% | 88.48% |
| Â | Exon Accuracy | 74.62% | 68.88% | 61.38% | 68.60% | 65.03% | 66.19% |