The Kaplan-Meier plot for a SNP, using its copy numbers to group samples. The copy number deletion at SNP_A-1882232 (rs16915104 at chromosome 12p12.3) is associated with poor survival. The chromosome view above the K-M plot shows a score value in the right-sided gray box, crossing the significant score threshold (red) derived from permutation analysis. Also, the neighboring SNPs are showing similar survival scores. These SNPs are in the transcribed region of gene PLEKHA5 (PEPP2) - a known oncogenic transcription factor (see text for details). The legend for each sample group shows the number of samples, the Expected events (Exp), and the Observed events (Obs).