Table 1 Summary of AnyExpress tools
TOOL | DESCRIPTION |
|---|---|
BindAffyCel | Binds multiple Affymetrix microarray .cel files column-wise into a single probe-by-sample text file |
BuildExclusionFeature | Creates exclusion features for filtering out undesirable tags |
BuildTarget | Creates reference targets for matching tag positions, using the user-selected transcriptome database |
Combine | Combines both open- and closed-platform gene expression data into a single target-by-sample text file |
DisplaySys | Prints currently available reference targets and exclusion features in the system directory |
NormalizeColumnBoundSamples | Performs quantile-normalization on a probe-by-sample text file |
Plot | Creates a coverage plot along the genomic region (.bedGraph format), which needs to be uploaded to the UCSC Genome Browser for viewing |