Learning genetic epistasis using Bayesian network scoring criteria

BMC Bioinformatics

Table 6 Evaluation of scoring criteria concerning detection of GAB2 SNPs

Rank	α = 3	α = 12	α = 21	α = 54	α = 162	α = 1000	K2	MML1	MDLn	Suz1	Epi2	MDR
1	4	4	4	4 G	4 G	4	4 G	4 G	4 G	3	4 G	4
2	4	4	4	4 G	4 G	4	4 G	4 G	4 G	3 G	4 G	4
3	4	4	4 G	4 G	4	4	4 G	4 G	4 G	3 G	4 G	4
4	4	4	4	4 G	4 G	4	4	4	4 G	3	4 G	4
5	4	4	4	4	4	4	4	3	4 G	3	3	4
6	4	4	4	4	4 G	4	4	4	4	3 G	4 G	4 G
7	4	4	4	4 G	4	4	4	4	4	3 G	4	4
8	4	4	4	4	4	4	4	4	4 G	3 G	4	4 G
9	4	4	4	4 G	4	4	4	4	4 G	3 G	4 G	4
10	4	4	4	4 G	4 G	4	4	3 G	4	2	4 G	4 G
11	4	4	4 G	4 G	4 G	4 G	4 G	4	4	3	4	4
12	4	4 G	4 G	4	4 G	4 G	4 G	4	4	3 G	4	4 G
13	4	4	4	4 G	4 G	4 G	4	4 G	4 G	3 G	4	4
14	4	4	4	4	4 G	4	4 G	4 G	4	3	3 G	4
15	4	4	4 G	4 G	4 G	4	4 G	3 G	4	3 G	4 G	4 G
16	4	4	4 G	4 G	4 G	4 G	4 G	4	4	3 G	3 G	4
17	4	4	4	4 G	4 G	4	4 G	3	4 G	3	4	4 G
18	4	4	4 G	4 G	4 G	4 G	4	4 G	4 G	3 G	4	4
19	4	4	4 G	4 G	4 G	4 G	4	4 G	4 G	3 G	4	4
20	4	4	4	4 G	4 G	4 G	4	4 G	4	3 G	4 G	4 G
21	4	4	4	4 G	4	4 G	4	4 G	4 G	3 G	4 G	4 G
22	4	4 G	4	4 G	4 G	4 G	4	4	4 G	3	4 G	4
23	4	4 G	4	4 G	4	4 G	4 G	4	4 G	3 G	4	4
24	4	4	4 G	4 G	4 G	4	4	4	4 G	3 G	4 G	4
25	4	4	4	4	4 G	4	4	4	4 G	3 G	3	4
Total # G G##GGG	0	3	7	19	18	10	10	11	16	17	14	8
# Diff G	0	2	3	7	6	4	4	4	8	8	8	6

Information about the 25 highest scoring models for a variety of scoring criteria. The number on the left in a cell is the number of SNPs in the model, and the letter G appears to the right of that number if a GAB2 SNP appears in the model. The second to the last row shows the total number of models in the top 25 that contained a GAB2 SNP. The last row shows the total number of different GAB2 SNPs appearing in the top 25 models.

ISSN: 1471-2105