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Table 1 Filtering Erroneous Heterozygous Sites

From: Strobe sequence design for haplotype assembly

Error Rate, Coverage % of False Positives % of False Negatives
5%,10× 0 0.467
10%,10× 0 0.197
15%,10× 0 0.142
5%,15× 0 0.329
10%,15× 0 0.149
15%,15× 0 0.114
  1. This table shows false positive rates (% of actual SNPs filtered) and false negative rates (% of erroneous sites not filtered) when sites are filtered using the likelihood ratio with a cutoff at -1.