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Figure 2 | BMC Bioinformatics

Figure 2

From: Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties

Figure 2

The minimum spanning tree of the amino acid indices stored in the AAindex1 release 9.0 [10]. Each rectangle is an amino acid index. Coloured nodes represent the indices classified by Tomii and Kanehisa [11] Red (A): alpha and turn propensities, Yellow (B): beta propensity, Green (C): composition, Blue (H): hydrophobicity, Cyan (P): physicochemical properties, Gray (O): other properties. White: the indices added to the AAindex after the release 3.0 by Tomii and Kanehisa [11].

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