Table 4 Error correction results
From: Repeat-aware modeling and correction of short read errors
Data | Method (d) | Sensitivity | Specificity | Gain | CPU Time(min) | Memory(GB) |
|---|---|---|---|---|---|---|
D 1 | SHREC | 81.2% | 99.9% | 80.3% | 23.9 | 5.9 |
Reptile | 78.9% | 99.9% | 78.9% | 0.6 | 0.19 | |
REDEEM | 71.3% | 99.9% | 51.5% | 114.1 | 2.5 | |
D 2 | SHREC | 54.0% | 99.9% | 52.7% | 22.7 | 5.8 |
Reptile | 57.8% | 99.9% | 57.8% | 0.5 | 0.16 | |
REDEEM | 78.6% | 99.9% | 64.6% | 72.7 | 1.6 | |
D 3 | SHREC | 29.3% | 99.9% | 26.7% | 21.7 | 5.8 |
Reptile | 46.8% | 99.9% | 46.8% | 0.5 | 0.13 | |
REDEEM | 86.4% | 99.9% | 79.4% | 31.2 | 0.63 |