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Table 1 Alignment Accuracy Comparison on Prosup Benchmark.

From: Incorporating Ab Initio energy into threading approaches for protein structure prediction

Methods

Accurate(%)

±4-residues(%)

FASTA

31.4

-

Sequence

34.1

-

PSI-BLAST

35.6

-

RAPTOR

44.0

63.7

A L

43.1

63.0

A O

52.0

70.1

  1. Result of FASTA and Sequence are from [22]; result of PSI-BLAST is from [23]; result of RAPTOR is obtained from the binary version running by us, this result may not reflect the accuracy of the current version.