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Table 1 Alignment Accuracy Comparison on Prosup Benchmark.

From: Incorporating Ab Initio energy into threading approaches for protein structure prediction

Methods Accurate(%) ±4-residues(%)
FASTA 31.4 -
Sequence 34.1 -
PSI-BLAST 35.6 -
RAPTOR 44.0 63.7
A L 43.1 63.0
A O 52.0 70.1
  1. Result of FASTA and Sequence are from [22]; result of PSI-BLAST is from [23]; result of RAPTOR is obtained from the binary version running by us, this result may not reflect the accuracy of the current version.