Table 2 Our SADI services based on the Mutation Impact ontology, text-mining pipeline and database. Detailed information (in RDF) about a service can be obtained by opening the service URL, obtained by attaching the prefix http://unbsj.biordf.net/mi-sadi/ to the name, in a Web browser.
From: Deploying mutation impact text-mining software with the SADI Semantic Web Services framework
service | operation |
|---|---|
mineTextForMutationImpacts | extracts mutation specifications from a document |
getMutationByWildtypeProtein | finds specifications of mutations grounded to a given protein |
getMutationByMutantProtein | finds specifications of mutations resulting in a protein specified by its sequence |
getMutationImpactByProteinProperty | finds mutation impact instances affecting a specified grounded protein property |
getMutationByImpact | finds mutation specifications corresponding to an impact on a specified grounded protein property |
getMutationSubseries | finds mutation series instances that are subseries of a given mutation series |
getMIDBBioEntityByType | finds biological entities by their type URIs |
getProteinPropertyByType | finds protein properties grounded to specific proteins by their type URIs |
visualiseMutationSeries | renders the 3D structure of the wildtype protein, from PDB, and highlights the point mutation positions |
visualiseMutationSeriesWithHomologyModeling | same as visualiseMutationSeries except that the 3D structure is predicted by homology modeling |