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Table 4 Detailed gene descriptions of SNPs selected in chromosome 6 of T1D study.

From: SNP and gene networks construction and analysis from classification of copy number variations data

SNP ID Gene Symbol Gene ID Description
rs6940177 TRDN 10345 triadin
rs17209874 RUNX2 860 runt-related transcription factor 2
rs9479373 LOC646024 646024 locus-region
rs3778077 NUDT3 11165 nudix (nucleoside diphosphate linked moiety X)-type motif 3
rs16875181 GPR116 221395 G protein-coupled receptor 116
rs7754428 GMDS 2762 GDP-mannose 4,6-dehydratase
rs6902158 LRRC16 55604 leucine rich repeat containing 16
rs6912853 BTN3A1 11119 butyrophilin, subfamily 3, member A1
rs991974 LMBRD1 55788 chromosome 6 open reading frame 209
rs643394 LOC442256 442256 similar to PPP1R14B protein
rs9397339 PLEKHG1 57480 pleckstrin homology domain containing, family G (with RhoGef domain) member 1
rs319123 C6orf210 57107 chromosome 6 open reading frame 210
rs352095 FLJ34503 285759 hypothetical protein FLJ34503
rs1738262 DNAH8 1769 dynein, axonemal, heavy polypeptide 8
rs7760230 SNX9 51429 sorting nexin 9
rs10947885 LRFN2 57497 leucine rich repeat and fibronectin type III domain containing 2
rs1334689 EPB41L2 2037 erythrocyte membrane protein band 4.1-like 2
rs1406882 FYN 2534 FYN oncogene related to SRC, FGR, YES
rs1563666 LOC643281 643281 intron
rs9321142 LAMA2 3908 laminin, alpha 2 (merosin, congenital muscular dystrophy)
rs2073012 NOX3 50508 NADPH oxidase 3
rs11154452 LAMA2 3908 laminin, alpha 2 (merosin, congenital muscular dystrophy)
rs9394755 UNC5CL 222643 unc-5 homolog C (C. elegans)-like
rs9371491 MTHFD1L 25902 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like an enzyme involved in THF synthesis in mitochondria
rs6918886 RPS6KA2 6196 ribosomal protein S6 kinase, 90kDa, polypeptide 2