Table 2 Properties of gene clusters from Archaea. Notation is defined in the Methods section.
From: Origin and evolution of gene families in Bacteria and Archaea
Clustering parameters | Distribution of clusters across genomes | Distribution of family sizes across genomes | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
E cut | f min | G tot | G(1) | G core |
| F tot | F(1) | F large |
| n max |
1e-30 | 0.8 | 66742 | 51882 | 66 | 2.38 | 2036 | 1867 | 3.4 | 1.14 | 80 |
1e-30 | 0.7 | 63590 | 48690 | 77 | 2.46 | 2009 | 1830 | 3.7 | 1.16 | 81 |
1e-30 | 0.6 | 61928 | 47109 | 83 | 2.51 | 1989 | 1807 | 4.0 | 1.17 | 90 |
1e-20 | 0.8 | 55885 | 42059 | 84 | 2.72 | 1946 | 1738 | 4.5 | 1.19 | 82 |
1e-20 | 0.7 | 51670 | 37875 | 105 | 2.88 | 1905 | 1684 | 5.0 | 1.22 | 91 |
1e-20 | 0.6 | 49379 | 35751 | 120 | 2.96 | 1875 | 1646 | 5.2 | 1.24 | 106 |
1e-10 | 0.8 | 46648 | 34801 | 105 | 3.01 | 1798 | 1548 | 6.9 | 1.29 | 94 |
1e-10 | 0.7 | 41153 | 29612 | 132 | 3.26 | 1722 | 1455 | 9.2 | 1.35 | 106 |
1e-10 | 0.6 | 37747 | 26530 | 157 | 3.43 | 1661 | 1382 | 10.6 | 1.40 | 156 |
1e-5 | 0.8 | 42850 | 32258 | 120 | 3.05 | 1677 | 1411 | 12.2 | 1.39 | 95 |
1e-5 | 0.7 | 36653 | 26571 | 140 | 3.33 | 1565 | 1291 | 16.7 | 1.48 | 129 |
1e-5 | 0.6 | 32574 | 23042 | 156 | 3.50 | 1463 | 1187 | 19.1 | 1.59 | 197 |
