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Table 3 Deletion clusters determined by BreakDancer and resulting conflicts. The numbers are obtained as described in Table 2. We account for two types of conflicts: Invalid (and thus self-conflicting) clusters and clusters contained in conflicting subsets of the valid clusters.

From: Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes

Data Set Deletions Confl. Deletions Del. ≥ 20 Confl. Del. ≥ 20
Normal 949 7 + 0 (0.7%) 851 6 + 0 (0.7%)
Tumor 27,054 1,312 +102 (5.2%) 21,770 1,312 +102 (6.5%)
Tumor-Subset 476 33 + 15 (10.1%) 333 14 + 14 (8.4%)
Pooled Tumor-spec. 20,698 101 + 363 (2.2%) 16,578 50 + 250 (1.8%)
Pooled-Subset Tumor-spec. 203 1 + 12 (6.4%) 146 1 + 7 (5.5%)