Table 2 Functional enrichments of the identified complexes detected by TSN-PCD and functional modules detected by DFM-CIN, MCL, MCODE, CPM, SPICI, and COACH
Number of | Average | % of significant | Average | Significant modules(P) | ||||
|---|---|---|---|---|---|---|---|---|
Algorithms | modules | size | modules | (-logP) | <E-15 | E-15 to E-10 | E-10 to E-5 | E-5 to 0.001 |
TSN-PCD | 865 | 26.41 | 95.95 | 16.36 | 39.77%(344) | 19.65%(170) | 26.24%(227) | 10.29%(89) |
DFM-CIN | 280 | 18.28 | 92.14 | 14.49 | 30.71%(86) | 13.93%(39) | 34.64%(97) | 12.86%(36) |
MCL | 619 | 6.58 | 59.93 | 5.07 | 4.2%(26) | 5.00%(31) | 20.52%(127) | 30.21%(187) |
MCODE | 50 | 15.66 | 92.00 | 8.53 | 12.00%(6) | 12.00%(6) | 50.00%(25) | 18.00%(9) |
CPM | 126 | 11.59 | 92.65 | 11.14 | 20.63%(26) | 14.28%(18) | 38.89%(49) | 19.84%(25) |
SPICI | 552 | 11.59 | 66.85 | 5.00 | 4.71%(26) | 3.80%(21) | 21.19%(117) | 37.14%(205) |
COACH | 894 | 8.99 | 85.57 | 7.76 | 10.85%(97) | 11.97%(107) | 35.79%(320) | 26.96%(241) |