Table 2 Most important edge types in Biomine
Edge type | Source databases | Count |
|---|---|---|
Protein is associated to Protein | STRING | 2,916,000 |
Article refers to Node | Entrez Gene, UniProt, KEGG, OMIM | 2,250,000 |
Node has annotation GO | Entrez Gene, UniProt, InterPro | 1,365,000 |
Protein contains Feature | UniProt | 507,000 |
Gene is homologous to Gene | HomoloGene | 259,000 |
Gene codes for Protein | Entrez Gene, STRING | 174,000 |
Gene is located in Locus | Entrez Gene, OMIM | 151,000 |
Protein belongs to Family | UniProt | 114,000 |
Protein interacts with Protein | Entrez Gene, UniProt | 98,000 |
OMIM refers to OMIM | OMIM | 85,000 |
Gene participates in Pathway | KEGG | 65,000 |
GO has parent GO | GO | 56,000 |
InterPro has parent InterPro | InterPro | 20,000 |
Compound participates in Pathway | KEGG | 9,700 |
Gene affects Phenotype | Entrez Gene | 5,100 |
Phenotype is mapped to Locus | OMIM | 3,400 |
total 8,078,000 |