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Table 1 Estimated error rates (as a percent) in PhiX samples

From: Estimation of sequencing error rates in short reads

Sample ID

Shadow regression

mm

mm / new genome

100217

2.613 (2.264, 2.962)

7.466

4.429

100514

1.416 (1.331, 1.500)

5.706

2.244

  1. The intervals in parentheses for shadow regression estimates are the 95% confidence intervals of the estimates. The column “mm” gives the mismatch counting estimates using the standard PhiX reference genome. The column “mm / new genome” gives the mismatch counting estimates using the PhiX genome corrected for mutations shown in Figure 7.
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BMC Bioinformatics

ISSN: 1471-2105

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