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Figure 3 | BMC Bioinformatics

Figure 3

From: A resource for benchmarking the usefulness of protein structure models

Figure 3

ModelDB result page. The structure of T4 lysozyme chain A (PDB code [PDB:118‚ÄČl]) and of one of its decoy models (the third sorted according to HHsearch [14] score of the template used) are displayed in the Jmol window as cartoons and colored according to solvent accessibilities. For the model, the transparent solvent excluded surface is also shown. A ligand binding Isoleucine is highlighted in both structures, as well as in the most accurate model for the same protein. The Isoleucine in one of the models is predicted to be in an incorrectly modeled loop, far away from its correct position.

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