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Table 1 Comparison of normalization factor estimators on yeast strain SEG1 through the MACS algorithm

From: Normalization of ChIP-seq data with control

  r ̂ Π ̂ 0 #peaks byp-value #peaks by FDR
NCIS 1.265 0.763 1844 1322
CCAT 1.173 0.707 1943 1723
SPP 1.370 0.826 1736 688
CisGenome 1.553 0.937 1547 4
PeakSeq 1.674 1.009 1431 1
MACS 1.658 1 1449 1
  1. The fourth column contains the numbers of detected peaks with p-value 1 e-5. The fifth column contains the numbers of detected peaks at FDR level 0.05.