Table 1 Currently integrated programs
From: Cloudgene: A graphical execution platform for MapReduce programs on private and public clouds
Name | Details | |
|---|---|---|
MapReduce programs | CloudBurst[4] | Highly sensitive short read mapping with MapReduce. |
Myrna[5] | A cloud computing tool for calculating differential gene expression in large RNA-seq datasets. | |
Crossbow[6] | A scalable software pipeline for whole genome re-sequencing analysis. | |
FastQ-Preprocessing4 | Quality control for high throughput sequence data in fastq format. | |
SNPFinder4 | Filters and extracts certain SNPs from genome wide association studies datasets. | |
Hadoop-Examples[3] | Several Hadoop example applications including Sort and Grep. | |
System images | Cloud BioLinux[10] | An AWS-EC2 image that includes a wide range of biological software, programming libraries as well as data sets. |
RStudio[11] | An AWS-EC2 image that enables the usage of all R programming tools via a web interface. | |
Web applications | HaploGrep[13] | A web application to determine mitochondrial DNA haplogroups. |