Table 3 Run time (sec.) to convert 1,000 IDs from one type to another using web–based AbsIDconvert
From: AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities
| Â | Rat230_2 | Cgh105a | RefSeq | EnsTrans | Entrez gene | GeneSymbol | EST seq | All |
|---|---|---|---|---|---|---|---|---|
| Â | (231,971) | (97,973) | (160,644) | (349,445) | (30,972) | (30,972) | (3,918,403) | Â |
Affymetrix Rat230_2 | 5.6 | 3.2 | 4.1 | 7.6 | 3.2 | 3.3 | 33 | 47.6 |
Agilent Cgh105a | 5.1 | 3.9 | 2.5 | 2.7 | 2.92 | 3.05 | 31.3 | 55.6 |
RefSeq | 4.5 | 3.1 | 3.6 | 3.6 | 2.3 | 2.2 | 31.9 | 34.5 |
Ensembl transcript | 2.9 | 3.8 | 3.1 | 4 | 2.47 | 3.02 | 34.6 | 47.1 |
Entrez gene | 2.7 | 2.9 | 2.8 | 3 | 7.5 | 7.1 | 18.4 | 35.3 |
Gene symbol | 2.9 | 2.8 | 2.7 | 2.9 | 8.5 | 7.5 | 16.6 | 38.2 |
EST sequences | 18.6 | 17.6 | 31 | 30.3 | 28.3 | 29.3 | 64.1 | 73.7 |