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Table 3 Run time (sec.) to convert 1,000 IDs from one type to another using web–based AbsIDconvert

From: AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities

  Rat230_2 Cgh105a RefSeq EnsTrans Entrez gene GeneSymbol EST seq All
  (231,971) (97,973) (160,644) (349,445) (30,972) (30,972) (3,918,403)  
Affymetrix Rat230_2 5.6 3.2 4.1 7.6 3.2 3.3 33 47.6
Agilent Cgh105a 5.1 3.9 2.5 2.7 2.92 3.05 31.3 55.6
RefSeq 4.5 3.1 3.6 3.6 2.3 2.2 31.9 34.5
Ensembl transcript 2.9 3.8 3.1 4 2.47 3.02 34.6 47.1
Entrez gene 2.7 2.9 2.8 3 7.5 7.1 18.4 35.3
Gene symbol 2.9 2.8 2.7 2.9 8.5 7.5 16.6 38.2
EST sequences 18.6 17.6 31 30.3 28.3 29.3 64.1 73.7