Table 4 Entrez ID to gene symbol conversion accuracy
From: AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities
Tool | totalMapped | TP | FP | FN | TN | TPR | FPR | ACC | FDR | F1_score |
|---|---|---|---|---|---|---|---|---|---|---|
AbsIDconvert | 885 | 866 | 19 | 109 | 6 | 88.82 | 76.00 | 87.20 | 2.15 | 93.12 |
DAVID | 853 | 790 | 63 | 146 | 1 | 84.40 | 98.44 | 79.10 | 7.39 | 88.32 |
MADGene | 854 | 730 | 124 | 145 | 1 | 83.43 | 99.20 | 73.10 | 14.52 | 84.44 |
HMS & IC | 724 | 723 | 1 | 270 | 6 | 72.81 | 14.29 | 72.90 | 0.14 | 84.22 |
Onto-Translate | 823 | 722 | 101 | 176 | 1 | 80.40 | 99.02 | 72.30 | 12.27 | 83.90 |
MatchMiner | 539 | 457 | 82 | 458 | 3 | 49.95 | 96.47 | 46.00 | 15.21 | 62.86 |
Clone/Gene ID converter | 537 | 441 | 96 | 457 | 6 | 49.11 | 94.12 | 44.70 | 17.88 | 61.46 |
g:Convert | 445 | 433 | 12 | 549 | 6 | 44.09 | 66.67 | 43.90 | 2.70 | 60.69 |
Synergizer | 445 | 433 | 12 | 549 | 6 | 44.09 | 66.67 | 43.90 | 2.70 | 60.69 |
Babelomics | 486 | 421 | 65 | 508 | 6 | 45.32 | 91.55 | 42.70 | 13.37 | 59.51 |