Table 3 Comparison of automatic annotations of the Naumovozyma castellii genome by YGAP and AUGUSTUS, to the reference (Scas) annotation
From: A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach
Scaffold | Same Coordinates | False Negatives | Overlap | False Positives | Wrong Start or Stop coordinate | |||||
|---|---|---|---|---|---|---|---|---|---|---|
YGAP | AUGUSTUS | YGAP | AUGUSTUS | YGAP | AUGUSTUS | YGAP | AUGUSTUS | YGAP | AUGUSTUS | |
scf7180000013410 (chr. 1) | 1427 | 1289 | 12 | 34 | 31 | 5 | 19 | 46 | 56 | 198 |
scf7180000013411 (chr. 2) | 851 | 764 | 8 | 28 | 12 | 5 | 13 | 19 | 35 | 106 |
scf7180000013405 (chr. 3) | 544 | 485 | 3 | 17 | 13 | 2 | 14 | 25 | 28 | 84 |
scf7180000013408 (chr. 4) | 462 | 418 | 1 | 10 | 9 | 1 | 3 | 9 | 16 | 59 |
scf7180000013414 (chr. 5) | 386 | 338 | 3 | 16 | 13 | 8 | 6 | 18 | 11 | 50 |
scf7180000013415b (chr. 6) | 374 | 336 | 3 | 7 | 6 | 1 | 10 | 15 | 17 | 56 |
scf7180000013412 (chr. 7) | 387 | 342 | 3 | 16 | 8 | 1 | 11 | 25 | 18 | 57 |
scf7180000013409 (chr. 8) | 331 | 294 | 1 | 8 | 11 | 11 | 6 | 9 | 15 | 44 |
scf7180000013415a (chr. 9) | 290 | 250 | 4 | 12 | 1 | 3 | 3 | 8 | 17 | 47 |
scf7180000013407 (chr. 10) | 208 | 185 | 2 | 5 | 5 | 1 | 5 | 8 | 10 | 34 |
Total | 5260 | 4701 | 40 | 153 | 109 | 38 | 90 | 182 | 223 | 735 |