|
Method
|
Correctly mapped
|
Incorrectly mapped
|
Skipped
|
Runtime
|
Memory
|
|---|
| |
reads
|
bases
|
reads
|
bases
|
reads
| |
footprint
|
|---|
|
E. coli
| | | | | | | |
|
BLASR-SA
|
108789
|
266.5M
|
229
|
0.38M
|
3766
|
48m 18s
|
202 MB
|
|
BLASR-BWT
|
108795
|
265.3M
|
259
|
0.45M
|
3604
|
59m 39s
|
46 MB
|
|
BWA-SW
|
111192
|
261.9M
|
1835
|
0.91M
|
3005
|
223m 57s
|
190 MB
|
|
H. sapiens
| | | | | | | |
|
BLASR-SA
|
41726
|
102.3M
|
1074
|
1.89M
|
413
|
92m 26s
|
14.7 GB
|
|
BLASR-BWT
|
41582
|
101.7M
|
1159
|
1.75M
|
472
|
53m 26s
|
8.1 GB
|
|
BWA-SW
|
40381
|
96.3M
|
292
|
1.16M
|
1554
|
105m 24s
|
4.2 GB
|
- Reads are simulated from E. coli and H. sapiens with length and accuracy parameters modeled from real reads from E. coli. Skipped reads are either marked as filtered in the SAM output, or missing from the output.
