Quality assessment of protein model-structures based on structural and functional similarities

BMC Bioinformatics

Table 4 Pearson correlation coefficients calculated for selected GOBA metrics for the CASP9-in-contest test set

	metaGA	GA_468	GA_579	yGA_468	yGA_579	yGA_579†
T0520	0.47	0.74	0.38	0.8	0.84	0.98
T0529 FM	0.17	0.22	0.14	0.39	0.19	0.10
T0543	0.43	0.51	0.61	0.39	0.24	0.96
T0547 FM	0.01	−0.01	0.11	0.76	0.76	0.81
T0561 FM	0.26	0.37	0.36	0.35	0.38	0.53
T0580	0.54	0.64	0.56	0.65	0.57	0.96
T0584	0.74	0.76	0.75	0.91	0.92	0.96
T0596	0.38	0.43	0.47	0.65	0.66	0.83
T0600	0.67	0.68	0.68	0.65	0.64	0.84
*T0604 FM**	0.33	0.32	0.34	0.81	0.67	0.88
T0614	0.47	0.46	0.56	0.59	0.57	0.56
T0619	0.17	0.1	0.12	0.21	0.21	0.94
T0622	0.57	0.62	0.64	0.49	0.51	0.66
T0628*	0.29	0.38	0.38	−0.14	−0.15	0.36
T0630*	−0.40	−0.4	−0.38	−0.27	−0.26	−0.16
T0643	0.58	0.6	0.62	0.25	0.22	0.48

Asterisks mark targets, for which GOBA the performance is explained in text. Last column (marked with a cross sign) lists the results from CASP9 validation for corresponding targets. Scores with the greatest improvements in terms of yGA₅₇₉ were underlined.

ISSN: 1471-2105