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Table 3 Nucleotide distribution in designed sequences

From: Frnakenstein: multiple target inverse RNA folding

 

Paired

Unpaired

Total

 

GC

AU

GU

A

C

G

U

A

C

G

U

Original data

0.57

0.30

0.13

0.30

0.20

0.23

0.27

0.23

0.24

0.28

0.24

Frnakenstein

0.55

0.36

0.09

0.32

0.31

0.09

0.29

0.25

0.29

0.19

0.26

MODENA

0.82

0.18

0

0.82

0.06

0.06

0.06

0.48

0.22

0.22

0.07

INFO-RNA

0.93

0.06

0.01

0.36

0.22

0.20

0.22

0.19

0.35

0.32

0.14

RNA-SSD

0.56

0.44

0

0.32

0.24

0.19

0.25

0.27

0.26

0.24

0.23

RNAInverse

0.46

0.41

0.14

0.29

0.25

0.21

0.25

0.23

0.24

0.26

0.26

NUPACK

0.73

0.27

0

0.42

0.26

0.09

0.22

0.28

0.31

0.22

0.18

Inv

0.32

0.39

0.28

0.30

0.26

0.22

0.22

0.20

0.21

0.30

0.29

  1. Comparison of the nucleotide distributions of the successfully designed sequences from different methods on the Rfam dataset, with distribution observed across the original sequences from Rfam shown in the first row.
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BMC Bioinformatics

ISSN: 1471-2105

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