Table 8 The number of clusters identified by m AP -KL for several top N ranked genes compared to three other FS methods (the number of genes per subset is in parenthesis)
| Â | Â | Â | Â | Identified Clusters | Â | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
DEGs | Â | Â | Â | Top ranked genes (mAP-KL) | Â | Â | Â | eBayes | maxT | RF-MDA | |||
| Â | 50 | 100 | 150 | 200 | 250 | 300 | 350 | 400 | 450 | 500 | Â | Â | Â |
50 | 5 (5) | 6 (6) | 4 (4) | 3 (3) | 3 (3) | 3 (3) | 2 (2) | 2 (2) | 2 (2) | 2 (2) | 2 (20) | 2 (20) | 5 (20) |
100 | 3 (3) | 5 (5) | 6 (6) | 6 (14) | 5 (5) | 4 (4) | 4 (4) | 4 (4) | 3 (3) | 3 (3) | 1 (20) | 2 (20) | 5 (20) |
200 | 3 (3) | 6 (6) | 8 (8) | 10 (10) | 11 (11) | 11 (11) | 8 (8) | 5 (5) | 5 (5) | 5 (5) | 1 (20) | 2 (20) | 10 (20) |
300 | 3 (3) | 6 (6) | 8 (8) | 10 (10) | 13 (13) | 15 (15) | 11 (11) | 7 (7) | 7 (7) | 6 (6) | 2 (20) | 4 (20) | 10 (20) |
400 | 4 (4) | 6 (6) | 8 (8) | 11 (11) | 13 (13) | 15 (15) | 18 (18) | 20 (20) | 21 (23) | 10 (10) | 3 (30) | 4 (30) | 16 (30) |
500 | 4 (4) | 7 (7) | 9 (9) | 11 (11) | 13 (13) | 16 (16) | 18 (18) | 20 (20) | 23 (23) | 25 (25) | 3 (30) | 4 (30) | 19 (30) |