dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes

BMC Bioinformatics

Table 4 Suggested predictions for experimental validation.

Gene Symbol	Chr	Str	SNP(rs#)	Location	Posterior	SS	FDR	Group
CCDC148	chr2	+	17492855	158989711	0.999999314	18	0.014	II
BAT1	chr6	-	3093976	31610839	0.999930191	8	0.12	II
PEBP1	chr12	+	1051470	117067614	0.999873859	14	0.051	II
LOC100130955	chr14	+	11160608	100382845	0.999795515	20	0.023	II
RPL10AP6	chr3	+	584959	61703763	0.999517203	11	0.055	II
KCNJ12	chr17	+	16962951	21259999	0.998953843	11	0.055	II
VARS2	chr6	+	1043483	31001706	0.998607936	14	0.051	II
BAT2	chr6	-	2272593	31709322	0.998223631	9	0.052	II
RPL10AP6	chr3	+	584959	61703763	0.995668725	9	0.052	I
KDM5B	chr1	+	10800864	201003241	0.995398014	9	0.052	I
TAPBP	chr6	-	1059288	33375649	0.995270134	13	0.057	II
KCNQ5	chr6	-	2000203	73753786	0.993101795	13	0.069	II
FER	chr5	+	2009646	108148856	0.989758091	6	0	I
LOC643534	chr5	+	2009646	108148856	0.989758091	6	0	I
LY6G5B	chr6	-	1266076	31748496	0.98719144	16	0.028	II
NOMO2	chr16	+	7179	14897344	0.979473344	7	0	II
BAT5	chr6	-	1475865	31765391	0.979015507	7	0	II
RXRB	chr6	-	6531	33271428	0.977747582	6	0	II
FER	chr5	+	2009646	108148856	0.962143895	6	0	II
ZBTB22	Chr6	-	1061783	33390605	0.96804794	12	0.076	II
LOC283398	chr12	-	3827521	93467186	0.908227908	7	0	I
UCRC	chr22	+	14115	28493525	0.889141351	15	0.039	II
MT2A	chr16	+	10636	55200843	0.709333922	10	0.142	II
RQCD1	chr2	+	526897	219141840	0.683651187	13	0.128	II
PSMC3IP	chr17	-	6963	37985122	0.661403579	12	0.146	II
CSTF3	chr11	-	1028564	33118584	0.479199531	8	0.373	II
LOC100128252	chr19	+	3971706	61697880	0.478128233	4	0.343	I
LOC100130814	chr14	-	2295655	100608883	0.446498085	18	0.228	II
IMPDH1	chr7	-	2228075	127821864	0.283348511	17	0.318	II
CLDN4	chr7	+	1127155	72884396	0.270700082	4	0.594	I

Boldface indicates proximity to known imprinted genes. Underline indicates a gene has multiple (≥3) SNPs with posteriors > 0.2. Genes are sorted by their posteriors. RPL10AP6 and FER are listed for both Group I and Group II. Abbreviations are the same as in Table 2.

ISSN: 1471-2105