Table 5 20 SNPs of which one specific allele had a higher transcript level than the other one among various tissues and individuals
From: dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes
SNP | Chr | Position | Str | Ratio | P-value | Gene Symbol |
|---|---|---|---|---|---|---|
rs13884 | chr19 | 18545100 | + | 1/24 | 3.58E-05 | UBA52 |
rs4621 | chr11 | 65380094 | + | 0/17 | 9.16E-05 | CFL1 |
rs425485 | chr19 | 3004801 | + | 0/13 | 0.000976563 | AES |
rs4874 | chr17 | 17227958 | - | 0/12 | 0.001171875 | LOC388344 |
rs6565924 | chr18 | 72820212 | + | 0/12 | 0.001171875 | MBP |
rs6554 | chr19 | 18546963 | + | 0/11 | 0.001953125 | UBA52 |
rs11543289 | chr17 | 34136120 | + | 0/10 | 0.003348214 | MLLT6/LOC100129395 |
rs17626 | chr19 | 44618360 | - | 1/13 | 0.005126953 | RPS16 |
rs8118 | chr16 | 4787169 | - | 0/9 | 0.005208333 | ROGDI |
rs9199 | chr18 | 72821323 | - | 0/8 | 0.009375 | MBP |
rs7612 | chr7 | 5533637 | + | 1/11 | 0.01171875 | ACTB |
rs6597982 | chr11 | 778006 | - | 1/11 | 0.01171875 | CEND1 |
rs1803283 | chr14 | 1.03E+08 | - | 2/14 | 0.011944111 | CKB |
rs7982 | chr8 | 27518397 | - | 2/13 | 0.015854779 | CLU |
rs3743566 | chr16 | 57103285 | + | 2/13 | 0.015854779 | NDRG4 |
rs2821 | chr20 | 5853778 | + | 3/16 | 0.015854779 | CHGB |
rs7121 | chr20 | 56912201 | + | 3/16 | 0.015854779 | GNAS |
rs12165042 | chr17 | 30502328 | + | 4/18 | 0.020589193 | UNC45B |
rs1150 | chr17 | 8003307 | + | 2/12 | 0.024362664 | VAMP2 |
rs10064485 | chr5 | 1.75E+08 | + | 2/11 | 0.039257813 | CPLX2 |