Table 5 Proportion of common and rare variants of the true SNPs found among the top 100 SNPs
From: A novel algorithm for simultaneous SNP selection in high-dimensional genome-wide association studies
Q1 | Â | ||||||
| Â | Proportion (%) | CAR | COR | NEG | MCP | BOOST | LASSO |
| Â | Common | 0.56 | 0.71 | 0.63 | 0.74 | 0.71 | 0.73 |
| Â | Rare | 0.44 | 0.29 | 0.37 | 0.26 | 0.29 | 0.27 |
Q2 | Â | ||||||
| Â | Proportion (%) | CAR | COR | NEG | MCP | BOOST | LASSO |
| Â | Common | 0.28 | 0.41 | 0.36 | 0.44 | 0.42 | 0.43 |
| Â | Rare | 0.72 | 0.59 | 0.64 | 0.56 | 0.58 | 0.57 |