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Table 2 Data characteristized by sequencing center and population

From: Copy Number Variation detection from 1000 Genomes project exon capture sequencing data

 

SC

 

CEU

CHB

 

JPT

 

TSI

YRI

Number of samples

18

14

 

9

 

51

14

Male/Female

9/9

5/9

 

5/4

 

24/27

2/12

Average read depth per gene

1679

1701

 

1597

 

1617

1865

Read length

36

36

 

36

 

36

36

 

BCM

 

CEU

CHB

CHD

JPT

LWK

 

YRI

Number of samples

40

62

78

16

108

 

45

Male/Female

20/20

15/47

38/40

5/11

51/57

 

22/23

Average read depth per gene

178

131

171

243

128

 

165

Read length

258

323

339

300

336

 

322

 

BI

 

CEU

CHB

CHD

JPT

  

YRI

Number of samples

16

13

28

34

  

19

Male/Female

9/7

11/2

12/16

16/18

  

12/7

Average read depth per gene

1623

1631

1675

1104

  

1612

Read length

73

75

74

75

  

76

  1. Population abbreviations:
  2. CEU – Utah residents with Northern and Western European ancestry.
  3. CHB – Han Chinese in Beijing.
  4. CHD – Chinese in Denver, Colorado.
  5. JPT – Japanese in Tokyo, Japan.
  6. LWK – Luhya in Webuye, Kenya.
  7. TSI – Toscans in Italy.
  8. YRI – Yoruba in Ibadan, Nigeria.
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BMC Bioinformatics

ISSN: 1471-2105

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