Table 1 Spectral counting software
From: Estimating relative abundances of proteins from shotgun proteomics data
Crux | APEX | emPAI Calc | PepC | ProteoQ | Scaffold | |
|---|---|---|---|---|---|---|
Metrics | ||||||
Provided | ||||||
SI N | X | |||||
emPAI | X | X | ||||
NSAF | X | |||||
dNSAF | X | |||||
Raw | X | X | X | |||
Other | X | X | X | |||
Other | ||||||
Features | ||||||
ParsimonyAnalysis | X | X | X | |||
Peptide-LevelCounting | X | |||||
Free | X | X | X | X | ||
Opensource | X | X | X | |||
Web Interface | X | X | ||||
Graphical userinterface | X | X | X | |||
Scriptable | X | X | X | |||