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Table 1 Spectral counting software

From: Estimating relative abundances of proteins from shotgun proteomics data

  Crux APEX emPAI Calc PepC ProteoQ Scaffold
Metrics  
Provided  
SI N X      
emPAI X   X    
NSAF X      
dNSAF X      
Raw X     X X
Other   X   X X  
Other  
Features  
ParsimonyAnalysis X     X X
Peptide-LevelCounting X      
Free X X X X   
Opensource X X   X   
Web Interface    X X   
Graphical userinterface   X    X X
Scriptable X X   X   
  1. This table summarizes the features of various spectral counting software methods.