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Table 6 Results of Mixed Replica search vs. REMC – original measures (int = 0.05)

From: Core Hunter II: fast core subset selection based on multiple genetic diversity measures using Mixed Replica search

Algorithm MR (t) CE (t) SH (t) HE (t) NE (t) Mixed (t)
  Bulk maize data set (275)
REMC 0.643 0.35s 0.700 0.35s 4.568 0.65s 0.685 0.55s 3.631 3.0s 10.790 7.0s
MixRep 0.643 0.19s 0.700 0.29s 4.568 0.50s 0.685 0.42s 3.631 2.0s 10.790 2.0s
Original 0.440   0.521   4.399   0.620   2.937    
  Accession maize data set (521)
REMC 0.723 0.75s 0.782 2.0s 4.724 2.0s 0.702 5.0s 3.886 6.0s 11.216 50.0s
MixRep 0.723 0.38s 0.782 0.68s 4.724 0.83s 0.702 1.7s 3.887 3.5s 11.216 10.2s
Original 0.630   0.696   4.467   0.591   2.742    
  Flax data set (708)
REMC 0.533 3.0s 0.533 3.0s 5.358 2.0s 0.278 3.0s 1.504 4.0s 8.965 30.0s
MixRep 0.533 0.81s 0.533 0.82s 5.358 0.76s 0.278 0.97s 1.504 1.5s 8.965 11.2s
Original 0.468   0.468   5.285   0.222   1.377    
  Pea data set (1283)
REMC 0.626 10.0s 0.629 7.0s 3.578 2.0s 0.451 3.0s 1.898 2.0s 8.083 40.0s
MixRep 0.626 1.4s 0.629 1.2s 3.578 0.62s 0.451 0.55s 1.898 0.95s 8.084 11.0s
Original 0.509   0.515   3.482   0.381   1.713    
  Large pea data set (4429)
REMC 0.633 06m05s 0.634 36.8s 3.515 27.6s 0.492 13.9s 1.982 06m53s 8.147 09m36s
MixRep 0.635 7.5s 0.637 13.0s 3.518 2.1s 0.496 8.9s 1.983 9.6s 8.158 02m15s
Original 0.464   0.466   3.348   0.352   1.609    
  1. *For each combination of algorithm, dataset and evaluation measure, 20 independent runs were performed from which averaged results are reported. By default runs were limited by a runtime of 60 seconds, except for the large pea dataset where a runtime limit of 10 minutes was applied.
  2. **Results shown are those of a pseudo-index containing all seven measures with equal weights.
  3. These results were computed on the helios server.