Table 3 Categories of initial assemblies
From: Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study
Class code | Transcript number | Percentage | Description |
|---|---|---|---|
= | 26212 | 76.97% | Complete match of intron chain |
c | 701 | 2.06% | Contained by a reference transcript |
j | 6207 | 18.23% | At least one splice junction is shared with a reference transcript |
i | 155 | 0.46% | A transfrag falling entirely within a reference intron |
o | 187 | 0.55% | Generic exonic overlap with a reference transcript |
u | 492 | 1.44% | Unknown, intergenic transcript |
x | 98 | 0.29% | Exonic overlap with reference on the opposite strand |
s | 1 | 0.00% | An intron of the transfrag overlaps a reference intron on the opposite strand |
total | 34053 | 100% | Total |