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Table 1 Mapsembler time and memory requirements on large data-sets

From: Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer

Reads data set

Mapping time (s)

Assembly time (s)

Total time (s)

Memory (MB)

S 10K

<1

<1

1

<1.5

S 100K

1

2

5

<1.5

S 1M

14

6

40

<1.5

S 10M

170

95

442

<1.5

S 100M

1813

903

3983

<1.5

  1. Time and memory requirements for targeted assembly of 10 starters using increasingly large human genome read data sets. Mapping time corresponds to the mapping phase (Algorithm 1, Steps 1 to 5). Assembly time corresponds to the assembly phase (Steps 18 to 14) per iteration.
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BMC Bioinformatics

ISSN: 1471-2105

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