From: Structural features based genome-wide characterization and prediction of nucleosome organization
Structural features | Prediction performance | |||
---|---|---|---|---|
 | Se | Sp | F-measure | Improvement(%) |
DNA denaturation | 0.703 | 0.412 | 0.520 | 18.47 |
Propeller twist | 0.699 | 0.409 | 0.516 | 17.68 |
DNA-bending stiffness | 0.702 | 0.408 | 0.516 | 17.68 |
Duplex disrupt energy | 0.625 | 0.394 | 0.483 | 10.21 |
Bendability | 0.623 | 0.391 | 0.480 | 9.56 |
Z-DNA | 0.702 | 0.411 | 0.518 | 18.23 |
Stacking energy | 0.695 | 0.408 | 0.514 | 17.25 |
Duplex free energy | 0.689 | 0.404 | 0.509 | 16.15 |
Aphilicity | 0.675 | 0.403 | 0.505 | 15.09 |
B-DNA twist | 0.654 | 0.384 | 0.484 | 10.34 |
Protein-DNA twist | 0.652 | 0.381 | 0.481 | 9.67 |
Protein deformation | 0.526 | 0.353 | 0.422 | -3.66 |
Meta DLaNe method | 0.734 | 0.457 | 0.563 | 28.45 |
HMM method | 0.723 | 0.445 | 0.551 | 25.63 |
Segal method | 0.474 | 0.408 | 0.439 | 0.00 |
NuPoP method | 0.356 | 0.489 | 0.412 | -6.04 |
N-score method | 0.317 | 0.439 | 0.368 | -16.05 |
Random method | 0.346 | 0.346 | 0.346 | -21.10 |