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Table 2 The average running times for protein homology sub-workflow on the Taverna, Galaxy, and Tavaxy systems

From: Tavaxy: Integrating Taverna and Galaxy workflows with cloud computing support

Database Sequence Taverna (local) Galaxy Tavaxy
0swissprot NP_061857.3 0:32 0:38 0:37
  NP_203747.2 0:31 0:32 0:34
  NP_060327.2 0:33 0:40 0:41
  Q9UNH5.1 0:21 0:23 0:23
  O60729.1 0:17 0:23 0:23
  P30304.2 0:20 0:15 0:25
  P30305.2 0:20 0:25 0:28
  NP_001781.2 0:19 0:25 0:26
  NP_054907.1 0:18 0:22 0:26
  Example Seq. 0:15 0:17 0:19
refseq NP_061857.3 2:56 3:20 3:15
  NP_203747.2 2:58 3:17 3:28
  NP_060327.2 2:12 2:00 2:02
  Q9UNH5.1 1:59 2:01 2:05
  O60729.1 1:50 1:39 1:42
  P30304.2 2:51 2:53 2:56
  P30305.2 2:12 2:21 2:22
  NP_001781.2 1:50 1:57 1:59
  NP_054907.1 1:53 2:01 2:04
  Example Seq. 1:46 1:43 1:47
  1. The average running times (in minutes) of the workflow involving BLAST and ClustalWfor the protein sequences in Table 1. The whole workflow runs on local infrastructure. The queries are performed against the swissprot and NCBI refseq databases.