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Table 2 The average running times for protein homology sub-workflow on the Taverna, Galaxy, and Tavaxy systems

From: Tavaxy: Integrating Taverna and Galaxy workflows with cloud computing support

Database

Sequence

Taverna (local)

Galaxy

Tavaxy

0swissprot

NP_061857.3

0:32

0:38

0:37

 

NP_203747.2

0:31

0:32

0:34

 

NP_060327.2

0:33

0:40

0:41

 

Q9UNH5.1

0:21

0:23

0:23

 

O60729.1

0:17

0:23

0:23

 

P30304.2

0:20

0:15

0:25

 

P30305.2

0:20

0:25

0:28

 

NP_001781.2

0:19

0:25

0:26

 

NP_054907.1

0:18

0:22

0:26

 

Example Seq.

0:15

0:17

0:19

refseq

NP_061857.3

2:56

3:20

3:15

 

NP_203747.2

2:58

3:17

3:28

 

NP_060327.2

2:12

2:00

2:02

 

Q9UNH5.1

1:59

2:01

2:05

 

O60729.1

1:50

1:39

1:42

 

P30304.2

2:51

2:53

2:56

 

P30305.2

2:12

2:21

2:22

 

NP_001781.2

1:50

1:57

1:59

 

NP_054907.1

1:53

2:01

2:04

 

Example Seq.

1:46

1:43

1:47

  1. The average running times (in minutes) of the workflow involving BLAST and ClustalWfor the protein sequences in Table 1. The whole workflow runs on local infrastructure. The queries are performed against the swissprot and NCBI refseq databases.
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BMC Bioinformatics

ISSN: 1471-2105

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