From: An integrative variant analysis suite for whole exome next-generation sequencing data
 | Atlas-Indel2 | GATK Unified Genotyper | SAMtools mpileup |
---|---|---|---|
Average INDELs/sample (Coding and Non-coding) | 23525 | 9648 | 26139 |
Average Coding INDELs/sample | 194 | 1947 | 1560 |
Average % 3(n) Coding INDELs/sample | 47.52 | 10.39 | 25.82 |
# Coding INDELs | 816 | 12027 | 12305 |
% 3(n) Coding INDELs | 38.11 | 7.78 | 23.84 |
# Non-coding INDELs | 19607 | 3441 | 28135 |
% 3(n) Non-coding INDELs | 14.06 | 9.79 | 17.19 |