Table 1 Standards initiatives and XML formats for different experimental technologies
From: DIPSBC - data integration platform for systems biology collaborations
Data domain | Guidelines | Exchange format | Standards initiative |
|---|---|---|---|
Microarrays | MIAME | MAGE-ML, MINiML | MGED society (http://www.mged.org) |
Mass spectrometry | MIAPE | mzML, mzData, mzXML | HUPO PSI-MS (http://www.psidev.info) |
Molecular interactions | MIMIx | PSI-MI | HUPO PSI-MI (http://www.psidev.info) |
In situ hybridization / Immunohistochemistry | MISFISHIE | MISFISHIE.dtd | MGED society (http://www.mged.org) |
Cellular assays | MIACA | CAOM | MIACA Standards Initiative (http://miaca.sf.net) |
Quantitative PCR | MIqPCR | RDM | RDML consortium (http://www.rdml.org) |
Genomic sequences | MIGS | RDM | Genomics standards consortium (http://gensc.org) |
Systems biology / Pathways | MIRIAM | SBML, CellML, BioPAX | Biomodels.net (http://biomodels.net/miriam) |