Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

BMC Bioinformatics

Table 2 Six different encodings used in this work

		Sequence	Smoothed		Structure	Smoothed
Classifier	Sequence	PSSM	Sequence PSSM	Structure	PSSM	Structure PSSM
NB	IDSeq NB	PSSMSeq NB	SmoPSSMSeq NB	IDStr NB	PSSMStr NB	SmoPSSMStr NB
SVM with Linear
Kernel	IDSeq LK	PSSMSeq LK	SmoPSSMSeq LK	IDStr LK	PSSMStr LK	SmoPSSMStr LK
SVM with Radial
Basis Function Kernel	IDSeq RBFK	PSSMSeq RBFK	SmoPSSMSeq RBFK	IDStr RBFK	PSSMStr RBFK	SmoPSSMStr RBFK

Abbreviations used in this manuscript for the six different encodings implemented in this study. (NB - Naïve Bayes, SVM - Support Vector Machine).

ISSN: 1471-2105