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Table 1 Programs Tested

From: SIS: a program to generate draft genome sequence scaffolds for prokaryotes

  Prokaryote vs. Unichromosomal vs. Standalone Block User
  Eukaryote Multichromosomal vs. Server Detection Interface
Abacas Prokaryote Multichromosomal Standalone nucmer, promer Command line
CONTIGuator Prokaryote Multichromosomal Standalone Blast+ Command line
fillScaffolds Eukaryote Multichromosomal Standalone nucmer, promer Command line
Mauve Aligner Prokaryote Unichromosomal Standalone Mauve GUI
OSLay Both Unichromosomal Standalone nucmer GUI
Projector2 Prokaryote Unichromosomal Server BLAT Web
r2cat Both Multichromosomal Standalone - GUI
SIS Prokaryote Unichromosomal Both nucmer, promer Web, Command line