Table 1 Programs Tested
From: SIS: a program to generate draft genome sequence scaffolds for prokaryotes
Prokaryote vs. | Unichromosomal vs. | Standalone | Block | User | |
|---|---|---|---|---|---|
Eukaryote | Multichromosomal | vs. Server | Detection | Interface | |
Abacas | Prokaryote | Multichromosomal | Standalone | nucmer, promer | Command line |
CONTIGuator | Prokaryote | Multichromosomal | Standalone | Blast+ | Command line |
fillScaffolds | Eukaryote | Multichromosomal | Standalone | nucmer, promer | Command line |
Mauve Aligner | Prokaryote | Unichromosomal | Standalone | Mauve | GUI |
OSLay | Both | Unichromosomal | Standalone | nucmer | GUI |
Projector2 | Prokaryote | Unichromosomal | Server | BLAT | Web |
r2cat | Both | Multichromosomal | Standalone | - | GUI |
SIS | Prokaryote | Unichromosomal | Both | nucmer, promer | Web, Command line |