Exploration of multivariate analysis in microbial coding sequence modeling

BMC Bioinformatics

Table 3 Analysis of variance for a mixed effect design in coding sequence modeling

	Sum of squares	DF	Mean squares	F-value	p-value
Method	0.19	1	0.189	92.92	p < 0.001
Sequence	0.08	2	0.040	19.53	p < 0.001
Method:Sequence	0.08	2	0.038	18.66	p < 0.001
Species	0.10	11	0.009	4.45	p < 0.001
Residual	0.11	55	0.01

Analysis of variance for transformed performance (see Method section) as an effect of Method (IMM or CPPLS), Sequence (sequence representation DNA, protein, codon) and their interaction Method:Sequence. The estimated standard deviation of the random effect of Species is ${\hat{σ}}_{s}$ = 0.077 and for the Residual ${\hat{σ}}_{e}$ = 0.049.

ISSN: 1471-2105