Skip to main content

Advertisement

Table 4 Validation of GapFiller's output on GAGE datasets

From: GapFiller: a de novo assembly approach to fill the gap within paired reads

Organism Library Avg contig length (bp) Aligned contigs Aligned length Genome cov
S. aureus Fragment
S.j. + fragment
182
3648
99.48%
98.74%
99.47%
98.76%
98.12%
95.00%
R. sphaeroides Fragment
S.j. + fragment
188
3736
99.91%
98.20%
99.92%
98.22%
98.65%
74.12%
  1. The experiments performed with both short jump (s.j.) and fragment libraries are done by picking the seeds from the short jump library only. We state that a contig is aligned against the reference if the alignment is a single hit covering 100% of contig's length and the percentage of identity is at least 95%. The statistics are computed on trusted contigs.