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Table 3 Results of 2D chemical structure image recognition on the test set

From: ChemEx: information extraction system for chemical data curation

Thresholds Number of

Structures (% to the total)

Average Similarity Score

Cannot find the InChI

9 (4.41%)

-

T > 70%

72 (35.29%)

91.42

T > 80%

61 (29.90%)

94.43

T > 90%

44 (21.57%)

98.30

Identical structure

28 (13.73%)

100.00

Total mapped structure

144 (70.59%)

71.86

  1. CACTVS script computed structure similarity between ground truth and regenerated structures based on standard InChI. In total 204 structures from PubChem were downloaded as the ground truth.