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Table 1 Contingency table for the ensemble method on all ten chromosomes on the complete data set

From: ARG-based genome-wide analysis of cacao cultivars

  Ame. Con. Cri. Cur. Gui. Iqu. Mar. Nac. Nan. Pur. c i Recall
Amelonado 68 1 0 0 6 1 4 0 1 13 94 0.72
Contamana 0 63 0 0 0 0 0 3 1 2 69 0.93
Criollo 0 0 39 0 0 0 0 0 0 0 39 1.0
Curaray 0 1 0 114 0 0 0 2 0 0 117 0.97
Guiana 0 0 0 0 58 0 1 0 0 0 59 0.98
Iquitos 0 0 0 0 0 99 2 1 6 9 117 0.85
Marañon 2 1 0 0 0 0 138 0 0 2 143 0.96
Nacional 2 0 1 2 0 1 0 46 0 0 52 0.88
Nanay 0 0 0 0 0 1 0 0 151 0 152 0.99
Purùs 0 1 2 1 0 0 0 7 0 99 110 0.90
p j 72 67 42 117 64 102 145 59 159 125 952  
Precision 0.94 0.94 0.93 0.97 0.91 0.97 0.95 0.78 0.95 0.79   
  1. The Ensemble method on all ten chromosomes on the complete data set: The 10 × 10 contingency table M for comparing the two partitions is shown above. The reference cluster (c i ) along the rows is from [5]. Our computed partition (p j ) into 10 groups is along the columns. The F-index for this matrix is 0.92 (where a perfect agreement has a value of 1). Also the precision TP TP + FP and recall TP TP + FN for each computed partition is shown along the last row and the last column respectively.