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Table 1 Distribution of MS repeats among retrotransposons and TE's

From: Computational and experimental analyses of retrotransposon-associated minisatellite DNAs in the soybean genome

Family1 Super-family No. of intact copies1 Repeat A Repeat B Repeat C Repeat D Repeat E Additional discreet loci2
    Total hits No. of discreet loci Total hits No. of discreet loci Total hits No. of discreet loci Total hits No. of discreet loci Total hits No. of discreet loci  
Gmr1 Gypsy 564 121 15 67 14 70 15 28 15 49 16 16
Gmr2 Copia 837 24 5 34 5 37 5 8 4 17 6 4
Gmr3 Gypsy 867 88 12 72 10 87 13 15 8 33 12 28
Gmr4 Gypsy 1363 354 38 224 37 226 38 90 38 150 50 78
Gmr5 Copia 401 141 20 73 13 75 14 28 14 50 18 42
Gmr6 Copia 763 203 19 115 18 141 23 41 18 68 20 12
Gmr7 Copia 195 10 1 4 1 6 2 3 2 6 3 1
Gmr9 Gypsy 3247 13293 1561 9137 1428 9211 1543 2999 1468 5510 1890 3975
Gmr12 Gypsy 114 44 5 34 5 42 5 10 3 20 6 2
Gmr14 Copia 43 0 0 0 0 1 1 0 0 0 0 0
Gmr15 Copia 84 4 1 4 1 1 1 1 1 2 1 0
Gmr16 Copia 116 6 1 0 0 0 0 0 0 0 0 0
Gmr17 Gypsy 422 23 3 16 2 2 2 2 2 4 2 1
Gmr18 Copia 204 10 2 14 2 16 2 5 2 8 3 1
Gmr19 Gypsy 581 214 27 113 24 114 22 46 20 76 28 19
Gmr21 Gypsy 157 85 12 89 14 76 13 34 15 59 18 6
Gmr22 Copia 119 3 1 4 1 1 1 1 1 2 1 0
Gmr24 Copia 79 2 1 5 1 4 1 0 0 2 1 0
Gmr25 Gypsy 307 111 13 61 11 71 13 28 10 48 13 21
Gmr28 Copia 100 7 1 14 1 15 1 2 1 4 1 0
Gmr34 Gypsy 120 2 1 4 1 1 1 1 1 2 1 9
Gmr35 Copia 95 9 1 8 1 11 2 2 1 4 1 0
Gmr37 Copia 255 35 4 50 5 51 5 9 4 22 10 5
Gmr51 Gypsy 27 4 1 0 0 0 0 1 1 3 2 0
Gmr52 Gypsy 20 6 1 0 0 0 0 0 0 0 0 0
Gmr59 Gypsy 31 0 0 0 0 3 1 0 0 0 0 0
Gmr68 Copia 12 13 1 6 1 7 1 3 1 6 2 0
Gmr75 Gypsy 17 9 2 6 2 5 2 4 2 6 2 0
Gmr79 Gypsy 49 3 1 0 0 2 1 0 0 0 0 0
Gmr80 Gypsy 6 12 1 5 1 7 1 2 1 4 1 0
Gmr90 Copia 10 9 1 4 1 5 1 4 1 5 1 0
Gmr110 Gypsy 6 0 0 0 0 2 1 0 0 0 0 0
Gmr123 Gypsy 3 0 0 0 0 1 1 0 0 0 0 0
Gmr128 Gypsy 5 10 2 7 2 9 2 5 2 8 2 0
Gmr139 Gypsy 88 28 4 26 4 14 4 5 4 11 4 12
Gmr146 Gypsy 3 0 0 0 0 0 0 0 0 1 1 0
Gmr163 Gypsy 3 1 1 5 1 6 1 2 1 4 1 0
Gmr169 Gypsy 18 12 1 5 1 8 2 4 3 10 4 4
Gmr190 Copia 21 12 1 5 1 7 1 3 2 7 2 0
Gmr192 Gypsy 3 0 0 0 0 0 0 0 0 1 1 0
Gmr290 Gypsy 3 1 1 0 0 0 0 1 1 0 0 0
Gmr459 Gypsy 10 0 0 0 0 0 0 0 0 1 1 0
Gmr522 Gypsy 17 6 1 6 1 0 0 1 1 2 1 0
Others2 Multi ND ND ND ND ND ND ND ND ND ND ND 17
Unknown NA NA ND ND ND ND ND ND ND ND ND ND 75
Total   11385 14915 1763 10217 1610 10335 1742 3388 1648 6205 2126 4328
  1. ND: Not determined; NA: Not applicable
  2. 1From Du et al. [11]
  3. 2From unannotated sites (see text); includes 9 LTR retrotransposons, 1 LINE, and 7 DNA transposons