Table 4 Analysis of the 12 proteins from the UniProtKB/Swiss-Prot database with a very long fuzzy tandem repeat
From: Ab initio detection of fuzzy amino acid tandem repeats in protein sequences
Protein | Tandem repeats found by | ||||||
|---|---|---|---|---|---|---|---|
Acc # | ID | Length | PTRStalker | XSTREAM | T-REKS | TRUST | RADAR |
Q8IVF2 | AHNK2_HUMAN | 5795aa | 165-x-24 | 165-x-23 | * | ** | 163-x-31 |
[720-4666] | [774-4617] | [289-5529] | |||||
Q9N4M4 | ANC1_CAEEL | 8545aa | 915-x-6 | 903-x-4.27 | 58-x-4 | ** | *** |
[3000-8491] | [4342-8199] | [2336-2567] | |||||
P08519 | APOA_HUMAN | 4548aa | 1495-x-3 | 114-x-37 | 114-x-24 | 114-x-39 | 111-x-38 |
[0-4486] | [7-4220] | [1501-4125] | [18-4523] | [17-4282] | |||
P20930 | FILA_HUMAN | 4061aa | 1339-x-3 | 323-x-11 | * | 324-x-12 | *** |
[32-4051] | [268-3902] | [82-3935] | |||||
Q54CU4 | COLA_DICDI | 11103aa | 433-x-17 | 430-x-17 | * | ** | 424-x-22 |
[1175-8554] | [1257-8691] | [301-9409] | |||||
Q8R0W0 | EPIPL_MOUSE | 6548aa | 515-x-8 | 515-x-8 | * | ** | *** |
[2000-6548] | [2067-6529] | ||||||
Q9Y6R7 | FCGBP_HUMAN | 5405aa | 1367-x-3 | 1201-x-3 | * | 1201-x-5 | 394-x-13 |
[1000-5102] | [1100-4811] | [21-5405] | [444-5382] | ||||
P05790 | FIBH_BOMMO | 5263aa | 1049-x-5 | 168-x-30 | 8-x-19 | ** | *** |
[1-5247] | [152-5221] | [3362-3495] | |||||
Q9UKN1 | MUC12_HUMAN | 5478aa | 1548-x-3 | 1557-x-2 | 25-x-8 | 28-x-151 | *** |
[74-4719] | [446-3569] | [2049-2280] | [215-5123] | ||||
Q8WXI7 | MUC16_HUMAN | 22152aa | 156-x-61 | 156-x-61 | 156-x-17 | ** | 153-x-61 |
[12038-21555] | [12047-21567] | [12420-15000] | [12046-21559] | ||||
Q6PZE0 | MUC19_MOUSE | 7524aa | 652-x-9.6 | 163-x-36.4 | * | ** | *** |
[1071-7372] | [1281 -7214] | ||||||
Q8WZ42 | TITIN_HUMAN | 34350aa | 1082-x-4 | 28-x-6 | 10-x-26 | ** | 395-x-28 |
[22186-26525] | [11428-11596] | [11445-11686] | [20001-29694] | ||||