PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL

BMC Bioinformatics

Table 1 PyMod integrated tools

BLAST	http://blast.ncbi.nlm.nih.gov/Blast.cgi
PSI-BLAST	http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on
MUSCLE	http://www.drive5.com/muscle/
ClustalW	http://www.ebi.ac.uk/Tools/msa/clustalw2/
Cealign	http://cl.sdsc.edu/ce.html
Modeller	http://salilab.org/modeller/

This table summarizes the tools that have been integrated into PyMod providing their URLs.

ISSN: 1471-2105