Table 1 Main components of the minimalistic quantitative ontology
From: OREMPdb: a semantic dictionary of computational pathway models
Entity | has |
|---|---|
Annotation | type:STRING, uri:STRING, information:STRING. |
Species | name:STRING, internalId:STRING, initialValue:REAL, inPathway:PATHWAY, hooks:SET_OF_ANNOTATIONS. |
Kinetic reaction | internalId:STRING, kinetics:FORMULA, kineticParameters:SET_OF_PARAMETERS, inPathway:PATHWAY, reactants:SET_OF_SPECIES, catalysts:SET_OF_SPECIES, products:SET_OF_SPECIES, hooks:SET_OF_ANNOTATIONS. |
Parameter | name:STRING, value:REAL. |
Pathway | fullname:STRING, hooks:SET_OF_ANNOTATIONS. |