Description | Mapping | Generated triple (example) |
---|---|---|
Create a triple that defines the value of the title of a given bibliographic reference. | map:somatic_ref_Title a d2rq:PropertyBridge; d2rq:belongsToClassMap map:somatic_ref; d2rq:property bibtex:hasTitle; d2rq:column "SomaticRef15.Title";. | <http://bioinformatics.istge.it/logvd/resource/somatic_refs/7> <http://data.bibbase.org/ontology/#hasTitle> "Mutations in the p53 gene occur in diverse human tumour types" |
Create a triple that defines the value of the wild type aminoacid for a given gene variation. Conditional clauses avoid definitions for special cases (empty field, dash character and "NA" value). | map:variation_hasWildTypeResidue a d2rq:PropertyBridge; d2rq:belongsToClassMap map:variation; d2rq:property mio:hasWildTypeResidue; d2rq:column "mutations15.WT_AA"; d2rq:condition "mutations15.WT_AA ! = ('NA')"; d2rq:condition "mutations15.WT_AA ! = ('')"; d2rq:condition "mutations15.WT_AA ! = ('-')";. | <http://bioinformatics.istge.it/logvd/resource/variations/994> <http://unbsj.biordf.net/ontologies/mutation-impact-ontology.owl#hasWildTypeResidue>"P" |
Creates a triple that establishes a link to the TP53 human gene description in HGNC as implemented in Bio2RDF. | map:gene_HGNC a d2rq:PropertyBridge; d2rq:belongsToClassMap map:gene; d2rq:property diseasome:hgncId; d2rq:uriPattern "http://bio2rdf.org/hgnc:11998";. | <http://bioinformatics.istge.it/logvd/resource/genes/TP53> <http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/hgncId> <http://bio2rdf.org/hgnc:11998> |