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Table 2 Summary of the experimental results on the 112 gene loci on the 13 ENCODE regions

From: PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text

  

PIntron

Exogean

ASPic

Exon level

Sn

0.529

0.444

0.390

 

Sp

0.622

0.606

0.427

Intron level

Sn

0.874

0.733

0.633

 

Sp

0.789

0.777

0.567

Transcript level

Sn

0.564

0.251

0.342

 

Sp

0.418

0.450

0.252

Nucleotide level

Sn

0.889

0.657

0.635

 

Sp

0.916

0.865

0.632

Annotated genes

112

104

93

Total running time (seconds)

2,961

3,446

168,607

  1. The best value of each row is highlighted in boldface.
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BMC Bioinformatics

ISSN: 1471-2105

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